Quick and Easy to get started with biocondutor installation!!!
Bioconductor packages to start off your analysis based on the annoted workflows in the bioconductor
For more details visit  http://www.bioconductor.org/help/workflows/
# #### You may need to install some more packages from the workflow pages if you want to work on the examples there ####

Launch R and just cut and paste the code below into your and it should work fine!

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source(“http://bioconductor.org/biocLite.R”)
biocLite ();
#
#Oligonucleotide Arrays
#
biocLite (c(“affy”, “gcrma”, “affyPLM”)
biocLite (c(“oligo”))
biocLite (c(“pdInfoBuilder”))
biocLite (c(“lumi”, “lumiHumanAll.db”,” lumiMouseAll.db”))
biocLite (c(“lumiMouseAll.db”))
biocLite (c(“lumiHumanIDMapping”,”lumiMouseIDMapping”, “beadarray”, “illuminaHumanv1BeadID.db”, “ill
uminaHumanV1.db”, “illuminaMousev1BeadID.db”, “illuminaMouseV1.db”))
#
#High-throughput Sequencing
#
biocLite (c(“IRanges”, “GenomicRanges”,”genomeIntervals”, “ShortRead”, “Rsamtools”, “rtracklayer”,”BSgenome”,”GenomicFeatures”, “biomaRt”,”SRAdb”, “CSAR”, “chipseq”, “ChIPseqR”, “ChIPsim”, “ChIPpeakAnno”, “DiffBind”, “iSeq”, “rGADEM”, “segmentSeq”, “BayesPeak”, “PICS”, “edgeR”, “DESeq”, “baySeq”, “DEGseq”, “Genominato”,”DEXSeq”));
#
# Annotation
#
biocLite (c(“AnnotationDbi”, “GO.db”))
#
# Variant Calling
biocLite(“VariantAnnotation”)
#
#Finding Candidate Binding Sites for Known Transcription Factors via Sequence Matching
#
biocLite (c(“MotifDb”,”seqLogo”,”motifStack”))