Journal Club

Graduate students and Postdoctoral scholars meet biweekly to discuss new innovations in the field of optics and photonics. Meetings are held on alternating Wednesdays at 12:00 AM in 574 Boston Ave. Rm 118.

Current Officers

President

Deeksha Sankepalle

Vice President

Fatemeh Tavakoli

Treasurer

Jodee Frias

Secretary

Avijit Paul

Committee Chair

Brooke Bednarke

Previously discussed papers

2022

  • J. Shi, Wong, T. T. Wong, Y. He, et al. “High-resolution, high-contrast mid-infrared imaging of fresh biological samples with ultraviolet-localized photoacoustic microscopy.” Nat. Photonics13, 609–615 (2019). doi: 10.1038/s41566-019-0441-3
  • E. Hysi, M. N. Fadhel, Y. Wang, J.A. Sebastian, A. Giles, et al. “Photoacoustic imaging biomarkers for monitoring biophysical changes during nanobubble-mediated radiation treatment.” Photoacoustics. 2020 Jul. 25, 2020. doi: 10.1016/j.pacs.2020.100201
  • A. L. Williams, J. E. Fitzgerald, F. Ivich, E. D. Sontag, and M. Niedre, “Short-Term Circulating Tumor Cell Dynamics in Mouse Xenograft Models and Implications for Liquid Biopsy,” Frontiers in Oncology, vol. 10. Nov. 06, 2020. doi: 10.3389/fonc.2020.601085
  • Mahmoodkalayeh, Sadreddin et al. “Wavelength and pulse energy optimization for detecting hypoxia in photoacoustic imaging of the neonatal brain: a simulation study.” Biomedical optics express vol. 12,12 7458-7477. Nov. 10, 2021, doi:10.1364/BOE.439147
  • M. Mozaffarzadeh et al., “Motion-compensated noninvasive periodontal health monitoring using handheld and motor-based photoacoustic-ultrasound imaging systems,” Biomedical Optics Express, vol. 12, no. 3. The Optical Society, p. 1543, Feb. 23, 2021. doi: 10.1364/boe.417345.
  • O. Kholiqov, W. Zhou, T. Zhang, M. Zhao, S. Ghandiparsi, and V. J. Srinivasan, “Scanning interferometric near-infrared spectroscopy,” Optics Letters, vol. 47, no. 1. The Optical Society, p. 110, Dec. 21, 2021. doi: 10.1364/ol.443533.
  • Ø. I. Helle, F. T. Dullo, M. Lahrberg, J.-C. Tinguely, O. G. Hellesø, and B. S. Ahluwalia, “Structured illumination microscopy using a photonic chip,” Nature Photonics, vol. 14, no. 7. Springer Science and Business Media LLC, pp. 431–438, May 11, 2020. doi: 10.1038/s41566-020-0620-2.
  • C. Liu et al., “Reversibly Photoswitching Upconversion Nanoparticles for Super‐Sensitive Photoacoustic Molecular Imaging,” Angewandte Chemie International Edition. Wiley, Feb. 24, 2022. doi: 10.1002/anie.202116802.
  • B.-C. Chen et al., “Lattice light-sheet microscopy: Imaging molecules to embryos at high spatiotemporal resolution,” Science, vol. 346, no. 6208. American Association for the Advancement of Science (AAAS), Oct. 24, 2014. doi: 10.1126/science.1257998.

2021

  • S. Cao et al., “Dehydrogenase Binding Sites Abolish the “Dark” Fraction of NADH: Implication for Metabolic Sensing via FLIM,” J Phys Chem B, vol. 124, no. 31, pp. 6721-6727, Aug 6 2020. doi: 10.1021/acs.jpcb.0c04835.
  • F. Klein and C. Kranczioch, “Signal Processing in fNIRS: A Case for the Removal of Systemic Activity for Single Trial Data,” Frontiers in Human Neuroscience, vol. 13. Frontiers Media SA, Sep. 24, 2019. doi: 10.3389/fnhum.2019.00331.
  • E. Beletkaia, B. Dashtbozorg, R. G. Jansen, T. J. M. Ruers, and H. L. Offerhaus, “Nonlinear multispectral imaging for tumor delineation,” Journal of Biomedical Optics, vol. 25, no. 09. SPIE-Intl Soc Optical Eng, Sep. 03, 2020. doi: 10.1117/1.jbo.25.9.096001.
  • I. Pirovano et al., “Effect of adipose tissue thickness and tissue optical properties on the differential pathlength factor estimation for NIRS studies on human skeletal muscle,” Biomedical Optics Express, vol. 12, no. 1. The Optical Society, p. 571, Dec. 22, 2020. doi: 10.1364/boe.412447.
  • C. Ou et al., “Biodegradable Charge‐Transfer Complexes for Glutathione Depletion Induced Ferroptosis and NIR‐II Photoacoustic Imaging Guided Cancer Photothermal Therapy,” Angewandte Chemie International Edition, vol. 60, no. 15. Wiley, pp. 8157–8163, Mar. 04, 2021. doi: 10.1002/anie.202014852.
  • C. Zhang and S. A. Boppart, “Tracking the formation and degradation of fatty-acid-accumulated mitochondria using label-free chemical imaging,” Scientific Reports, vol. 11, no. 1. Springer Science and Business Media LLC, Mar. 23, 2021. doi: 10.1038/s41598-021-85795-1.
  • Y. Li et al., “Snapshot photoacoustic topography through an ergodic relay for high-throughput imaging of optical absorption,” Nature Photonics, vol. 14, no. 3. Springer Science and Business Media LLC, pp. 164–170, Jan. 20, 2020. doi: 10.1038/s41566-019-0576-2.
  • E. I. Galanzha et al., “In vivo liquid biopsy using Cytophone platform for photoacoustic detection of circulating tumor cells in patients with melanoma,” Sci Transl Med, vol. 11, no. 496, pp. eaat5857-eaat5857, Jun 12 2019. doi: 10.1126/scitranslmed.aat5857.
  • L. Yang, H. Wabnitz, T. Gladytz, A. Sudakou, R. Macdonald, and D. Grosenick, “Space-enhanced time-domain diffuse optics for determination of tissue optical properties in two-layered structures,” Biomedical Optics Express, vol. 11, no. 11. The Optical Society, p. 6570, Oct. 21, 2020. doi: 10.1364/boe.402181.
  • D. A. Gil, D. Deming, and M. C. Skala, “Patient-derived cancer organoid tracking with wide-field one-photon redox imaging to assess treatment response,” Journal of Biomedical Optics, vol. 26, no. 03. SPIE-Intl Soc Optical Eng, Mar. 22, 2021. doi: 10.1117/1.jbo.26.3.036005.
  • S. Takanezawa, T. Saitou, and T. Imamura, “Wide field light-sheet microscopy with lens-axicon controlled two-photon Bessel beam illumination,” Nature Communications, vol. 12, no. 1. Springer Science and Business Media LLC, May 20, 2021. doi: 10.1038/s41467-021-23249-y.
  • M. B. Applegate, C. A. Gómez, and D. M. Roblyer, “Modulation frequency selection and efficient look-up table inversion for frequency domain diffuse optical spectroscopy,” Journal of Biomedical Optics, vol. 26, no. 03. SPIE-Intl Soc Optical Eng, Mar. 25, 2021. doi: 10.1117/1.jbo.26.3.036007.
  • E. Liapis, U. Klemm, A. Karlas, J. Reber, and V. Ntziachristos, “Resolution of Spatial and Temporal Heterogeneity in Bevacizumab-Treated Breast Tumors by Eigenspectra Multispectral Optoacoustic Tomography,” Cancer Research, vol. 80, no. 23. American Association for Cancer Research (AACR), pp. 5291–5304, Sep. 29, 2020. doi: 10.1158/0008-5472.can-20-1011.
  • J. E. Sorrells et al., “Label-free characterization of single extracellular vesicles using two-photon fluorescence lifetime imaging microscopy of NAD(P)H,” Scientific Reports, vol. 11, no. 1. Springer Science and Business Media LLC, Feb. 08, 2021. doi: 10.1038/s41598-020-80813-0.
  • J. Gröhl et al., “Learned spectral decoloring enables photoacoustic oximetry,” Scientific Reports, vol. 11, no. 1. Springer Science and Business Media LLC, Mar. 22, 2021. doi: 10.1038/s41598-021-83405-8.
  • M. Seeger, A. C. Stiel, and V. Ntziachristos, “In vitro optoacoustic flow cytometry with light scattering referencing,” Scientific Reports, vol. 11, no. 1. Springer Science and Business Media LLC, Jan. 26, 2021. doi: 10.1038/s41598-021-81584-y.
  • L. Colombo et al., “Coherent fluctuations in time-domain diffuse optics,” APL Photonics, vol. 5, no. 7. AIP Publishing, p. 071301, Jul. 01, 2020. doi: 10.1063/5.0011838.
  • A. Y. Vinokurov, O. A. Stelmashuk, P. A. Ukolova, E. A. Zherebtsov, and A. Y. Abramov, “Brain region specificity in reactive oxygen species production and maintenance of redox balance,” Free Radical Biology and Medicine, vol. 174. Elsevier BV, pp. 195–201, Oct. 2021. doi: 10.1016/j.freeradbiomed.2021.08.014.
  • D. R. Beaulieu, I. G. Davison, K. Kılıç, T. G. Bifano, and J. Mertz, “Simultaneous multiplane imaging with reverberation two-photon microscopy,” Nature Methods, vol. 17, no. 3. Springer Science and Business Media LLC, pp. 283–286, Feb. 10, 2020. doi: 10.1038/s41592-019-0728-9.

2020

  • Y. Han et al., “Cameraless high-throughput three-dimensional imaging flow cytometry,” Optica, vol. 6, no. 10. The Optical Society, p. 1297, Sep. 27, 2019. doi: 10.1364/optica.6.001297.
  • M. Moothanchery, R. Bi, J. Y. Kim, G. Balasundaram, C. Kim, and M. Olivo, “High-speed simultaneous multiscale photoacoustic microscopy,” Journal of Biomedical Optics, vol. 24, no. 08. SPIE-Intl Soc Optical Eng, p. 1, Aug. 19, 2019. doi: 10.1117/1.jbo.24.8.086001.
  • M. B. Applegate et al., “OpenSFDI: an open-source guide for constructing a spatial frequency domain imaging system,” Journal of Biomedical Optics, vol. 25, no. 01. SPIE-Intl Soc Optical Eng, p. 1, Jan. 10, 2020. doi: 10.1117/1.jbo.25.1.016002.
  • M. Veettikazhy et al., “Multi-photon attenuation-compensated light-sheet fluorescence microscopy,” Scientific Reports, vol. 10, no. 1. Springer Science and Business Media LLC, May 15, 2020. doi: 10.1038/s41598-020-64891-8.
  • S. Abbasi et al., “Chromophore selective multi-wavelength photoacoustic remote sensing of unstained human tissues,” Biomedical Optics Express, vol. 10, no. 11. The Optical Society, p. 5461, Oct. 01, 2019. doi: 10.1364/boe.10.005461.
  • P. Lanka et al., “Non-invasive investigation of adipose tissue by time domain diffuse optical spectroscopy,” Biomedical Optics Express, vol. 11, no. 5. The Optical Society, p. 2779, Apr. 28, 2020. doi: 10.1364/boe.391028.
  • J. Y. Hwang et al., “Non-contact acoustic radiation force impulse microscopy via photoacoustic detection for probing breast cancer cell mechanics,” Biomedical Optics Express, vol. 6, no. 1. The Optical Society, p. 11, Dec. 03, 2014. doi: 10.1364/boe.6.000011.
  • J. H. Lee et al., “Simultaneous label-free autofluorescence and multi-harmonic imaging reveals in vivo structural and metabolic changes in murine skin,” Biomedical Optics Express, vol. 10, no. 10. The Optical Society, p. 5431, Oct. 01, 2019. doi: 10.1364/boe.10.005431.
  • M. B. Robinson, S. A. Carp, A. Peruch, D. A. Boas, M. A. Franceschini, and S. Sakadžić, “Characterization of continuous wave ultrasound for acousto-optic modulated diffuse correlation spectroscopy (AOM-DCS),” Biomedical Optics Express, vol. 11, no. 6. The Optical Society, p. 3071, May 14, 2020. doi: 10.1364/boe.390322.
  • X. Tan, R. Patil, P. Bartosik, J. M. Runnels, C. P. Lin, and M. Niedre, “In Vivo Flow Cytometry of Extremely Rare Circulating Cells,” Scientific Reports, vol. 9, no. 1. Springer Science and Business Media LLC, Mar. 04, 2019. doi: 10.1038/s41598-019-40143-2.
  • M. A. K. Sagar, K. P. Cheng, J. N. Ouellette, J. C. Williams, J. J. Watters, and K. W. Eliceiri, “Machine Learning Methods for Fluorescence Lifetime Imaging (FLIM) Based Label-Free Detection of Microglia,” Frontiers in Neuroscience, vol. 14. Frontiers Media SA, Sep. 03, 2020. doi: 10.3389/fnins.2020.00931.

Former Officers

President:

  • Jason Bressner (2010-2011)
  • Alexander Mitropoulos (2011-2015)
  • Dimitra Pouli (2015-2018)
  • Giles Blaney (2021)
  • Cristianne Fernandeze (2022)

Vice President:

  • Joanna Xylas (2010-2011)
  • Pami Anderson (2013 – 2015)
  • Matthew Applegate (2015-2017)
  • Lauren Baugh (2018)
  • Nilay Vora (2021-2022)

Treasurer:

  • Debbie Chen (2010-2011)
  • Dimitra Pouli (2014-2015)
  • Emily DeBaun (2015-2017)
  • Thao Pham (2018)
  • Cristianne Fernandez (2021)
  • Christopher Nguyen (2022)

Secretary:

  • Nishanth Krishnamurthy (2014-2015)
  • Pamela Anderson (2015-2017)
  • Kristen Tgavalekos (2018)
  • Christopher Polleys (2021)
  • Skye Edwards (2022)

Committee Chair:

  • Christopher Polleys (2022)