News

124 posts

June 2023

Francini Fonseca Lopez defends her PhD thesis. Congratulations, Francini!

May 2023

Marc Descoteaux completed his 4+1 program and graduated with a M.S. in Materials Science and Engineering. Congratulations, Marc!

May 2023

Our paper  “Training neural network models using molecular dynamics simulation results to efficiently predict cyclic hexapeptide structural ensembles,” is published in J. Chem. Theory Comput. 

May 2023

Jovan Damjanovic defends his PhD thesis. Congratulations, Jovan!

March 2023

The YSL lab presented at the Tufts Open House!

March 2023

YSL receives the Tufts University Rising Innovator Award.

March 2023

YSL receives the Annual Women Leadership Award from the Rotary Club of Cambridge. 

October 2022

Our paper “A backbone-dependent rotamer library with high (φ, ψ) coverage using metadynamics simulations,” is published in Protein Sci.

September 2022

Our paper “Binary combinatorial scanning reveals potent poly-alanine-substituted inhibitors of protein—protein interactions” with the Pentelute Lab in the Department of Chemistry at MIT is published in Comm. Chem.

June 2022

Marc Descoteaux wins the ACS undergraduate award in physical chemistry! Congratulations, Marc!

February 2022

Marc Descoteaux wins the Class of 1898 Prize! Congratulations, Marc!

February 2022

Our paper “The endoplasmic reticulum proteostasis network profoundly shapes the protein sequence space accessible to HIV envelope” with the Shoulders Lab in the Department of Chemistry at MIT is published in PLOS Biol.

January 2022

Dr. Arghya Ghosh joins the group. Welcome, Arghya!

November 2021

Minh Ho and Nomindari Bayaraa join the group. Welcome, Nomi and Minh!

November 2021

Our lab receives the Seed Grant from the Data Intensive Studies Center (DISC) at Tufts! This is a collaborative project with Prof. James Murphy in the Department of Mathematics at Tufts.

October 2021

Jovan Damjanovic wins the ACS COMP Chemical Computing Group Excellence Award for Graduate Students! Congratulations, Jovan!

October 2021

Our paper “Structure prediction of cyclic peptides by molecular dynamics + machine learning” is published in Chem. Sci.

September 2021

Our paper “N-amination converts amyloidogenic tau peptides into soluble antagonists of cellular seeding” with the Del Valle Lab in the Department of Chemistry at University of Notre Dame is published in ACS Chem. Neurosci.

September 2021

Our paper “CATBOSS: Cluster analysis of trajectories based on segment splitting” with the Murphy Lab at Tufts Mathematics is published in J. Chem. Inf. Model.

August 2021

Our paper “Stapled beta-hairpins using 4-mercaptoproline” with the Kritzer Lab at Tufts Chemistry is published in J. Am. Chem. Soc.