130 posts

April 2024

Our paper “The immune-evasive Proline 283 substitution in influenza nucleoprotein increases aggregation propensity without altering the native structure,” with the Shoulders Lab at MIT is published in Sci. Adv.

February 2024

Tiffani has been selected as a DESRES Doctoral Fellow! Congratulations, Tiffani! 

December 2023

Our paper  “A boron-dependent antibiotic derived from a calcium-dependent antibiotic” with the Chu Lab at the National Taiwan University is published in Angew. Chem.

November 2023

Our paper  “Computational prediction of cyclic peptide structural ensembles and application to the design of Keap1 binders,” with the Kritzer Lab at Tufts is published in J. Chem. Inf. Model. 

September 2023

Our paper  “Genetically-encoded discovery of perfluoroaryl-macrocycles that bind to albumin and exhibit extended circulation in-vivo,”  with the Derda Lab at the University of Alberta is published in Nat. Commun.

September 2023

Our paper  “Modeling changes in molecular dynamics time series as Wasserstein barycentric interpolations,” with the Murphy Lab at Tufts is published at the SampTA 2023 Conference.

June 2023

Francini Fonseca Lopez defends her PhD thesis. Congratulations, Francini!

May 2023

Marc Descoteaux completed his 4+1 program and graduated with a M.S. in Materials Science and Engineering. Congratulations, Marc!

May 2023

Our paper  “Training neural network models using molecular dynamics simulation results to efficiently predict cyclic hexapeptide structural ensembles,” is published in J. Chem. Theory Comput. 

May 2023

Jovan Damjanovic defends his PhD thesis. Congratulations, Jovan!

March 2023

The YSL lab presented at the Tufts Open House!

March 2023

YSL receives the Tufts University Rising Innovator Award.

March 2023

YSL receives the Annual Women Leadership Award from the Rotary Club of Cambridge. 

October 2022

Our paper “A backbone-dependent rotamer library with high (φ, ψ) coverage using metadynamics simulations,” is published in Protein Sci.

September 2022

Our paper “Binary combinatorial scanning reveals potent poly-alanine-substituted inhibitors of protein—protein interactions” with the Pentelute Lab in the Department of Chemistry at MIT is published in Comm. Chem.

June 2022

Marc Descoteaux wins the ACS undergraduate award in physical chemistry! Congratulations, Marc!

February 2022

Marc Descoteaux wins the Class of 1898 Prize! Congratulations, Marc!

February 2022

Our paper “The endoplasmic reticulum proteostasis network profoundly shapes the protein sequence space accessible to HIV envelope” with the Shoulders Lab in the Department of Chemistry at MIT is published in PLOS Biol.

January 2022

Dr. Arghya Ghosh joins the group. Welcome, Arghya!

November 2021

Minh Ho and Nomindari Bayaraa join the group. Welcome, Nomi and Minh!